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  • With equipment of last generation, scientists linked to FAPESP Program for Research on Bioenergy (BIOEN) begin to decipher genome of sugar cane. Read the news Pontapé inicial (Authorship: Agência FAPESP).

List of Publications

 

The biotechnology roadmap for sugarcane improvement - Tropical Plant Biology. 10.1007/s12042-010-9050-5

Hotta, C. T., Lembke, C. G., Ochoa, E. A., Cruz, G. M. Q., Domingues, D. S., Hoshino, A. A., Santos, W. D., Souza, A. P., Crivellari, A., Marconi, T. G., Santos, M. O., Melotto-Passarin, D. M., Mollinari, M., Margarido, G. R. A., Carrer, H., Souza, A. P., Garcia, A. A. F., Buckeridge, M. S., Menossi, M., Van Sluys, M-A. and Souza, G. M. (2010).

Sugarcane for bioenergy production: an assessment of yield and regulation of sucrose content - Plant Biotechnology Journal 8, 263-276

Waclawovsky, A.J., Sato, P.M., Lembke, C.G., Moore, P.H., Souza, G.M. (2010).

Genes Associated to Sucrose Content - BMC Genomics 10, 120

Papini-Terzi, F. S., Rocha, F.R., Vêncio, R.Z.N., Felix, J.M., Branco, D., Waclawovsky, A.J., Del-Bem, L.E.V., Lembke, C.G., Costa, M. D-B. L., Nishiyama-Jr, M.Y., Vicentini, R., Vicentz, M., Ulian, E.C., Menossi, M., Souza, G.M. (2009).

Naming Transcription Factors - Plant Physiol 149, 4-6

Gray, J., Bevan, M., Brutnell, T., Buell, R., Cone, K., Hake, S., Jackson, D., Kellogg, E., Lawrence, C., McCouch, S., Mockler, T., Moose, S., Paterson, A., Peterson, T., Rokshar, D., Souza, G. M., Springer, N., Stein, N., Timmermans, M., Wang, G.-L., Grotewold, E. (2009).

Improving Sugarcane for Biofuel: Engineering for an even better feedstock - Global Change Biology Bioenergy doi: 10.1111/j.1757-1707.2009.01016.x

Lam, E., Shine Jr., J., da Silva, J., Lawton, M., Bonos, S., Calvino, M., Carrer, H., Silva-Filho, M. C., Glynn, N., Helsel, Z., Ma, J., Richard-Jr., F., Souza, G. M., Ming, R. (2009).

Expression profile of signal transduction components in a sugarcane population segregating for sugar content - Tropical Plant Biology. DOI 10.1007/s12042-009-9031-8

Felix, J. M., Papini-Terzi, F. S., Rocha, F. R., Vêncio, R. Z. N., Vicentini, R., Nishiyama-Jr, M. Y., Ulian, E. C., Souza, G. M. and Menossi, M.

GRASSIUS: A Platform for Comparative Regulatory Genomics Across the Grasses - Plant Physiol 149, 171-180

Yilmaz, A., Nishiyama-Jr, M. Y., Garcia-Fuentes, B., Souza, G. M., Janies, D., Gray, J. and Grotewold, E. (2009).

Elevated CO2 increases photosynthesis, biomass, productivity and modifies gene expression in sugarcane - Plant Cell and Environment 31:8,1116-1127

Silva, A.P., Gaspar, M., Silva, E.A.; Ulian, E.C.; Waclawovsky, A.J.; Nishiyama, M.Y.; Vicentini, R.; Teixeira, M.M.; Souza, G.M.; Buckeridge, M.S. (2008).

Signal transduction-related responses to phytohormones and environmental inputs in sugarcane - BMC Genomics, 8:71

Flávia Riso Rocha, Flávia Stal Papini-Terzi, Milton Yutaka Nishiyama-Jr, Ricardo Zorzetto Nicoliello Vêncio, Renato Vicentini, Rodrigo Drummond Couto Duarte, Vicente Eugênio de Rosa Jr, Fabiano Vinagre da Silva, Carla Barsalobres, Ane Hackbart de Medeiros, Fabiana Aparecida Rodrigues, Eugênio César Ulian, Sônia Marli Zingaretti di Mauro, Raul Santin Almeida, Antonio Vargas de Oliveira Figueira, Adriana Silva Hemerly, Marcio de Castro Silva Filho, Marcelo Menossi and Glaucia Mendes Souza (2007).

Transcription Profiling of Signal Transduction-Related Genes in Sugarcane Tissues - DNA Research 12, 27-38

Flávia Stal Papini-Terzi, Flávia Riso Rocha, Ricardo Zorzetto Nicoliello Vêncio, Kátia Cristina Oliveira, Juliana de Maria Felix, Renato Vicentini, Cristiane de Souza Rocha, Ana Carolina Quirino Simões, Eugênio César Ulian, Sônia Marli Zingaretti di Mauro, Aline Maria da Silva, Carlos Alberto de Bragança Pereira, Marcelo Menossi and Glaucia Mendes Souza (2005).

Analysis and Functional Annotation of an Expressed Sequence Tag Collection for Tropical Crop Sugarcane - Genome Research 13:2725-2735

André L. Vettore, Felipe R. da Silva, Edson L. Kemper, Glaucia M. Souza, Aline M. da Silva, Maria Inês T. Ferro, Flavio Henrique-Silva, Éder A. Giglioti, Manoel V.F. Lemos, Luiz L. Coutinho, Marina P. Nobrega, Helaine Carrer, Suzelei C. França, Maurício Bacci, Jr., Maria Helena S. Goldman, Suely L. Gomes, Luiz R. Nunes, Luis E.A. Camargo, Walter J. Siqueira, Marie-Anne Van Sluys, Otavio H. Thiemann, Eiko E. Kuramae, Roberto V. Santelli, Celso L. Marino, Maria L.P.N. Targon, Jesus A. Ferro6, Henrique C.S. Silveira, Danyelle C. Marini, Eliana G.M. Lemos, Claudia B. Monteiro-Vitorello, José H. M. Tambor, Dirce M. Carraro, Patrícia G. Roberto, Vanderlei G. Martins, Gustavo H. Goldman, Regina C. de Oliveira, Daniela Truffi, Carlos A. Colombo, Magdalena Rossi, Paula G. de Araujo, Susana A. Sculaccio, Aline Angella, Marleide M.A. Lima, Vicente E. de Rosa, Jr, Fábio Siviero, Virginia E. Coscrato, Marcos A. Machado, Laurent Grivet, Sonia M.Z. Di Mauro, Francisco G. Nobrega, Carlos F.M. Menck, Marilia D.V. Braga, Guilherme P. Telles, Frank A.A. Cara, Guilherme Pedrosa, João Meidanis and Paulo Arruda (2003).

The sugarcane signal transduction (SUCAST) catalogue: prospecting signal transduction in sugarcane - Genetics and Molecular Biology 24, 25-34

Glaucia Mendes Souza, Ana Carolina Quirino Simoes, Katia Cristina Oliveira, Humberto Miguel Garay, Leonardo Costa Fiorini, Felipe dos Santos Gomes, Milton Yutaka Nishiyama-Junior and Aline Maria da Silva. (2001).

Sugarcane, a tropical crop with a highly complex genome. In: J. F. Morot-Gaudry, P. Lea and J. F. Briat. (Org.). Functional Plant Genomics. Science Publishers.

Hoarau, J. Y.; Souza, G. M.; D'Hont, A.; Menossi, M.; Pinto, L.R.; Souza, A. P.; Grivet, L.; Menck, C. F. M.; Ulian, E. C.; Vincentz, M. (2007).

Sugarcane: a Major Source of Sweetness, Alcohol, and Bio-energy. In: Paul Moore; Ray Ming. (Org.). Genomics of Tropical Crop Plants.

D'Hont, A.; Souza, G.M.; Menossi, M.; Vincentz, M.; Van Sluys M-A ; Glaszmann JC ; Ulian, E. C. (2008).

Functional Genomics: Transcriptomics of Sugarcane – Current Status and Future Prospects. In: Sugarcane volume of “Genomics of Industrial Crop Plants”. Robert Henry (Org).

Casu,  R. E., Hotta, C. T., Souza, G. M.

Structural genomics and genome sequencing in sugarcane. In: Sugarcane volume of “Genomics of Industrial Crop Plants”. Robert Henry (Org).

Paterson, A. H., Souza, G. M., Van-Sluys, M. A., Ming, R. and Angelique D’Hont.

Sugarcane: the most efficient crop for biofuel production. Handbook of Bioenergy Crop Plants. Taylor & Francis Group, Boca Rotan, Florida, USA. Editors: Chittaranjan Kole, Chandrashekhar P. Joshi and David R. Shonnard.

Cantarella, H., Buckeridge, M. S., Van Sluys, M. A., Souza, A. P., Garcia, A. A. F., Nishiyama-Jr, M. Y., Maciel-Filho, R., Brito Cruz, C. H. and Souza, G. M.

The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome. Tropical Plant Biology. DOI: 10.1007/s12042-011-9079-0.

Souza, G. M., Berges, H., Bocs, S. S., Casu, R., D, Berg A., Ferreira, J. E., Henry, R., Ming, R., Potier, B., Van Sluys, M. A., Vincentz, M., Paterson, A. H. (2011)

Sugarcane Improvement: How far can we go? Current Opinion in Biotechnology 23, 1–6.

Costa, M. D-B. L, Hotta, C. T., Carneiro, M. S., Chapola, R. G., Hoffmann, H. P., Garcia, A. A. F., Souza, G. M. (2011)

The SUCEST-FUN Regulatory Network Database: Designing and Energy Grass. Sugar Cane International Sugar Journal. Vol.14.

Nishiyama-Jr, M.Y., Vicente F.F.R., Lembke, C.G., Sato, P.M., Dal-Bianco, M.L., Fandiño, R.A., Hotta, C.T., Souza, G.M. (2012)

Identification of sense and antisense transcripts regulated by drought in sugarcane. Plant Molecular Biology. 79, 461-77.

Lembke, C. G., Nishiyama-Jr, M. Y., Sato, P. M., Andrade, R. F., Souza, G. M. (2012).

A novel stress-induced sugarcane gene confers tolerance to drought, salt and oxidative stress in transgenic tobacco plants. PLoS ONE. 7(9): e44697.

Begcy, K., Mariano, E. D., Gentile, A., Lembke, C. G., Souza, G. M., Menossi, M. (2012).

Biofuel and Energy Crops: high yield Saccharinae take center stage in the post genomics era. Genome Biology 14, 210.

Ferreira, S. S., Nishiyama-Jr, M. Y., Paterson, A. H., Souza, G. M. (2013).

Circadian rhythms of sense and antisense transcription in sugarcane, a highly polyploid crop. PLoS ONE 8(8): e71847. doi:10.1371/journal.pone.0071847.

Hotta, C. T., Nishiyama-Jr, M. Y., Souza, G. M. (2013).

General Coordinator: Glaucia Souza - Department of Biochemistry - University of São Paulo

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