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Landmark or Region: Examples: scga7_uti_cns_0000003, scga7_unitig_344089.	Annotate Restriction Sites Download Decorated FASTA File Download Sequence File Download Track Data
Data Source Sugarcane Genome - SP80-3280	Scroll/Zoom:     Show 100 kbp Show 71 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

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 Alleles analysis

 Alleles analysis

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Sorghum Allele CDS

 Prediction and Annotation

 Prediction and Annotation

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CDS:EVM - GaTE Prediction and Annotation	gene:EVM - GaTE Prediction and Annotation	three_prime_UTR:PASA - GaTE Prediction and Annotation
CDS:PASA - GaTE Prediction and Annotation	gene:PASA - GaTE Prediction and Annotation	transposable_element:MGE_COMPLETE - GaTE Prediction and Annotation
exon:EVM - GaTE Prediction and Annotation	LTR_retrotransposon:MGE_COMPLETE - GaTE Prediction and Annotation	transposable_element:MGE_PARTIAL - GaTE Prediction and Annotation
exon:PASA - GaTE Prediction and Annotation	mRNA:PASA - GaTE Prediction and Annotation	transposable_element:MGE_SCREEN - GaTE Prediction and Annotation
five_prime_UTR:PASA - GaTE Prediction and Annotation	protein_coding_primary_transcript - GaTE Prediction and Annotation

 RNA-seq

 RNA-seq

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Orfeome (raw)

 Reads

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BLASTN Agilent Oligos - Match	RNA-Seq hybrid SP80-3280 - Internode 1	RNA-Seq Saccharum spontaneum
BLASTN Sorghum (Sbicolor v2.1) CDS - Match	RNA-Seq hybrid SP80-3280 - Internode 5	RNA-Seq Saccharum spontaneum Coverage (density plot)
BLASTN SUCEST-SAS - Match	RNA-Seq hybrid SP80-3280 - Leaves	RNA-Seq SP80-3280 - Internode 1 Coverage (density plot)
ESTs (Expressed Sequence Tags)	RNA-Seq Saccharum officinarum	RNA-Seq SP80-3280 - Internode 5 Coverage (density plot)
ESTs Coverage (density plot)	RNA-Seq Saccharum officinarum Coverage (density plot)	RNA-Seq SP80-3280 - Leaves Coverage (density plot)

 Sequences

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Reads

 Transcript

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BLASTN Trinity Transcripts Assembly - Match	Saccharum spontaneum Exon - Cufflinks prediction	SP-80 Transcript - Cufflinks prediction
Saccharum officinarum Exon - Cufflinks prediction	Saccharum spontaneum Transcript - Cufflinks prediction
Saccharum officinarum Transcript - Cufflinks prediction	SP-80 Exon - Cufflinks prediction

 Analysis

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